There have been a number of changes with regard to this list as best I can tell. I only checked on the streams you identified. Whether additional Class A streams are now being stocked in some part of them, I did not search.
Here are some notes I made, subject to a disclaimer on my research method/source:
Disclaimer: used current info on PFBC website for stocking details for March 2008 through February 2009, including currently published Class A list. Also, searched for information based on stream name and county supplied by troutbert.
Dotters Creek, Monroe, Sec 4, 2.55 miles. Mertz Rd (T442) to confl. Middle Cr.
-- Not on stocking list March 2008 through February 2009
Fishing Creek, Clinton, Sec 13, 1.5 miles. Cedar Run to Axe Factory Hollow
-- rainbows only in Sect. 13, rainbows and brown in section 14
Little Lehigh Creek, Lehigh, Sec 4, 4.9 miles. Spring Cr confl. to Wild Cherry Lane (T508)
Little Lehigh Creek, Lehigh, Sec 7, 2.06 miles. 4 km above Country Club Rd (T473) to Fish Hatchery Rd (SR2010)
-- also section 5 and 9 ( additional ? miles)(section 9 is on Class A list)
West Licking Creek, Huntingdon, Sec 2, 4.35 miles. 2.13 km above Mt. Union Water Res. to lower boundary Tuscarora State Forest
-- also section 3 ( additional ? miles)(West Licking not on Class A list)
Martins Creek, Northampton, Sec 1, 4.73 miles. Confl. E&W Br. Martins Cr to discharge Bangor Sewage plant, near unnamed tributary.
-- also section 3 ( additional ? miles)(Martins Creek not on Class A list)
Monocacy Creek, Northampton, Sec 8, 0.99 miles. Illicks Mill Dam to Shoenersville Rd (SR3017)
-- also sections 3, 5 & 9 ( additional ? miles)
Mugser Run, Columbia, Sec 2, 4.68 miles. T315 Fisherdale to mouth.
-- rainbow only once pre-season (Class A for brown only)
Sacony Creek, Berks, Sec 2, 3.29 miles. Bowers Rd (T616) to large spring 625 meters above SR1029 (Normal Ave)
Sacony Creek, Berks, Sec 3, 1.49 miles. Large spring 625 meters above SR1029 (Normal Ave) to SR 222 bypass (Kutztown)
-- no brookies stocked (No part of Sacony on Class A list)
Big Trout Creek, Lehigh, Sec 2, 6.4 miles. Furnace Rd (T790) in Lehigh Furnace to mouth on Lehigh River
-- no brookies stocked (Class A for browns)
Yellow Creek, Bedford, Sec 4, 1.66 miles. Confl. Beaver Creek to Red Bank Hill.
-- rainbow only in section 4, also stocking in section 5 FFO area (Class A in section 2 for browns)
Long Run, Clinton, Sec 1, 4.72 miles. Confl. Pepper & Washburn Runs to sink 450 meters downstream of Auction Rd (SR2008) .
-- brookie only (Not on Class A list, Long Run in Luzerne and Potter, though are on Class A)
Sixmile Run, Centre, Sec 2, 3.42 miles. Dayton Dam to unnamed tributary upstream of Hutton Run.
-- also section 3, brown and brooks (Not on Class A list)
Standing Stone Creek, Centre/Huntingdon, Sec 2, 4.65 miles. Penn Roosevelt Dam to mouth of Detweiler Run
-- brook only (Class A for browns)
Vanscoyoc Run, Blair, Sec 2, 4.54 miles. Decker Hollow Rd (SR4033) to mouth.
-- brown and brook (Not on Class A list)
Young Womans Creek, L BR, Clinton, Sec 2, 4.42 miles, Forest road bridge to Greenlick Run
-- also sections 1 & 3 (Not on Class A List)
Cold Run, Schuylkill, Sec. 2, 2.17 miles. Beaver Creek to mouth.
-- rainbow only once pre-season (Class A for brookies)